Malonate against succinate
"Malonate against succinate" is a free, interactive Class 11 Biology simulation for NEET, built on the NCERT section "Factors affecting enzyme activity" in Biomolecules. Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached. NEET has asked about this idea 3 times in 10 years of papers.
From the lesson Factors affecting enzyme activity in Biomolecules. Change the values and watch what happens.
What it shows
NCERT §9.8.4
Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached.
Controls
3 to try
- Slidersuccinate 0–50 mM
- Slidermalonate 0–20 mM
- Readoutvelocity vs [S] curve with and without inhibitor
Try this
With 10 mM malonate present, raise succinate until velocity is back to 90 % of Vmax.
Common mistake
A competitive inhibitor permanently lowers Vmax.
In NEET
10 years of papers
Asked 3 times in 10 years of NEET.
See the past questions: Biomolecules (chapter)
The idea behind it
NCERT §9.8.4
- Conditions that alter a protein's tertiary structure change enzyme activity: temperature, pH, substrate concentration, and the binding of specific chemicals that regulate it.
- Enzymes work within a narrow range of temperature and pH. Each shows its highest activity at an optimum temperature and an optimum pH, and activity falls on either side of the optimum.
- Low temperature keeps an enzyme temporarily inactive, while high temperature destroys its activity because heat denatures proteins.
- As substrate concentration rises, reaction velocity rises at first and then levels off at a maximum velocity (Vmax) that more substrate cannot exceed. There are fewer enzyme molecules than substrate molecules, and once all are occupied no free enzyme is left for the extra substrate.
- When a chemical that binds to the enzyme shuts off its activity, the process is inhibition and the chemical is an inhibitor.
- A competitive inhibitor closely resembles the substrate and competes with it for the substrate-binding site, so the substrate cannot bind and activity falls. Malonate inhibits succinic dehydrogenase because it closely resembles the substrate, succinate.
- Competitive inhibitors are often used to control bacterial pathogens.
Questions
4 answers
- What does the "Malonate against succinate" simulation show?
- Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached.
- What mistake does the "Malonate against succinate" simulation fix?
- A common mistake it clears up: A competitive inhibitor permanently lowers Vmax.
- Has NEET asked about this idea?
- Yes. NEET has asked about this idea 3 times in 10 years of papers.
- Is this simulation free?
- Yes. It is free and runs in the browser on a phone or a laptop. It belongs to the lesson "Factors affecting enzyme activity" in Biomolecules (Class 11 Biology).
Embed this simulation
Free, with a link back
Teaching this idea? Put the simulation on your own page or LMS with this code.