Biomolecules

Biology · Class 11

Simulation · Biology · Class 11

Malonate against succinate

"Malonate against succinate" is a free, interactive Class 11 Biology simulation for NEET, built on the NCERT section "Factors affecting enzyme activity" in Biomolecules. Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached. NEET has asked about this idea 3 times in 10 years of papers.

From the lesson Factors affecting enzyme activity in Biomolecules. Change the values and watch what happens.

Malonate against succinateBiology · Class 11

What it shows

NCERT §9.8.4

Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached.

Controls

3 to try

  • Slidersuccinate 0–50 mM
  • Slidermalonate 0–20 mM
  • Readoutvelocity vs [S] curve with and without inhibitor

Try this

With 10 mM malonate present, raise succinate until velocity is back to 90 % of Vmax.

Common mistake

A competitive inhibitor permanently lowers Vmax.

In NEET

10 years of papers

Asked 3 times in 10 years of NEET.

See the past questions: Biomolecules (chapter)

The idea behind it

NCERT §9.8.4

  • Conditions that alter a protein's tertiary structure change enzyme activity: temperature, pH, substrate concentration, and the binding of specific chemicals that regulate it.
  • Enzymes work within a narrow range of temperature and pH. Each shows its highest activity at an optimum temperature and an optimum pH, and activity falls on either side of the optimum.
  • Low temperature keeps an enzyme temporarily inactive, while high temperature destroys its activity because heat denatures proteins.
  • As substrate concentration rises, reaction velocity rises at first and then levels off at a maximum velocity (Vmax) that more substrate cannot exceed. There are fewer enzyme molecules than substrate molecules, and once all are occupied no free enzyme is left for the extra substrate.
  • When a chemical that binds to the enzyme shuts off its activity, the process is inhibition and the chemical is an inhibitor.
  • A competitive inhibitor closely resembles the substrate and competes with it for the substrate-binding site, so the substrate cannot bind and activity falls. Malonate inhibits succinic dehydrogenase because it closely resembles the substrate, succinate.
  • Competitive inhibitors are often used to control bacterial pathogens.

Questions

4 answers

What does the "Malonate against succinate" simulation show?
Malonate looks like succinate and takes the active site of succinic dehydrogenase; raising substrate out-competes it so the same Vmax is reached.
What mistake does the "Malonate against succinate" simulation fix?
A common mistake it clears up: A competitive inhibitor permanently lowers Vmax.
Has NEET asked about this idea?
Yes. NEET has asked about this idea 3 times in 10 years of papers.
Is this simulation free?
Yes. It is free and runs in the browser on a phone or a laptop. It belongs to the lesson "Factors affecting enzyme activity" in Biomolecules (Class 11 Biology).

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