Isolating DNA: open the cell, clean up, spool
"Isolating DNA: open the cell, clean up, spool" is a free, interactive Class 12 Biology simulation for NEET, built on the NCERT section "Isolating and cutting DNA" in Biotechnology: Principles and Processes. Getting pure DNA: pick the right wall-breaking enzyme for the cell, strip RNA and protein, then spool DNA from chilled ethanol. NEET has asked about this idea 4 times in 10 years of papers.
From the lesson Isolating and cutting DNA in Biotechnology: Principles and Processes. Change the values and watch what happens.
What it shows
NCERT §9.3, §9.3.1, §9.3.2
Getting pure DNA: pick the right wall-breaking enzyme for the cell, strip RNA and protein, then spool DNA from chilled ethanol.
Controls
4 to try
- Togglesource cell — bacterium / plant / fungus
- Tapadd lysozyme / cellulase / chitinase
- Tapadd ribonuclease, protease
- Tapadd chilled ethanol, then spool
Try this
Spool pure DNA from a fungal cell with no wasted or wrong reagents.
Common mistake
Using lysozyme to break open plant or fungal cells.
In NEET
10 years of papers
Asked 4 times in 10 years of NEET.
See the past questions: Restriction Enzymes, Biotechnology: Principles and Processes (chapter)
The idea behind it
NCERT §9.3, §9.3.1, §9.3.2
- The process runs in order: isolate DNA, cut it with restriction endonucleases, isolate the wanted fragment, ligate it into a vector, transfer it into the host, culture the host on a large scale, and extract the product.
- DNA must be pure, free of other macromolecules, before restriction enzymes can cut it. It lies within membranes, so cells are broken open to release it along with RNA, proteins, polysaccharides and lipids.
- Cell walls are broken with enzymes: lysozyme for bacteria, cellulase for plant cells, and chitinase for fungi.
- Genes lie on long DNA molecules wound around proteins such as histones. RNA is removed with ribonuclease and proteins with protease; other molecules have their own treatments.
- Adding chilled ethanol makes the purified DNA precipitate as fine threads in the suspension, which can be removed by spooling.
- Purified DNA is incubated with the restriction enzyme under that enzyme's optimal conditions. Agarose gel electrophoresis checks how far the digestion has gone, with DNA moving towards the anode. The vector DNA is cut the same way.
- The cut gene of interest and the cut vector are mixed and ligase is added, which gives recombinant DNA.
Questions
4 answers
- What does the "Isolating DNA: open the cell, clean up, spool" simulation show?
- Getting pure DNA: pick the right wall-breaking enzyme for the cell, strip RNA and protein, then spool DNA from chilled ethanol.
- What mistake does the "Isolating DNA: open the cell, clean up, spool" simulation fix?
- A common mistake it clears up: using lysozyme to break open plant or fungal cells.
- Has NEET asked about this idea?
- Yes. NEET has asked about this idea 4 times in 10 years of papers.
- Is this simulation free?
- Yes. It is free and runs in the browser on a phone or a laptop. It belongs to the lesson "Isolating and cutting DNA" in Biotechnology: Principles and Processes (Class 12 Biology).
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