Packing 2.2 m of DNA into a nucleus
"Packing 2.2 m of DNA into a nucleus" is a free, interactive Class 12 Biology simulation for NEET, built on the NCERT section "Packaging of the DNA helix" in Molecular Basis of Inheritance. Zoom from 2.2 m of DNA to a chromosome: DNA around histone octamers (+ve lysine/arginine), 200 bp per nucleosome, linker DNA, fibre, chromosome; eu- vs heterochromatin. NEET has asked about this idea 6 times in 10 years of papers.
From the lesson Packaging of the DNA helix in Molecular Basis of Inheritance. Change the values and watch what happens.
What it shows
NCERT § The DNA
Zoom from 2.2 m of DNA to a chromosome: DNA around histone octamers (+ve lysine/arginine), 200 bp per nucleosome, linker DNA, fibre, chromosome; eu- vs heterochromatin.
Controls
4 to try
- Sliderzoom level helix → nucleosome → fibre → chromosome
- Toggleneutralise histone charge
- Slidercompaction (euchromatin ↔ heterochromatin)
- Readoutbp count, nucleosomes, length
Try this
Find how many nucleosomes a 4400-bp stretch forms, then show which packing state is transcriptionally active.
Common mistake
Thinking histones are acidic; confusing euchromatin and heterochromatin.
In NEET
10 years of papers
Asked 6 times in 10 years of NEET.
See the past questions: Nuclear Organization, Molecular Basis of Inheritance (chapter)
The idea behind it
NCERT § "The DNA"
- Human diploid DNA is about 6.6 × 10⁹ bp; multiplied by 0.34 × 10⁻⁹ m per bp, the total length is about 2.2 m, far longer than a nucleus of about 10⁻⁶ m, so it must be packed tightly.
- In prokaryotes like E. coli there is no defined nucleus. The negatively charged DNA is held with some positively charged proteins in a region called the nucleoid, organised in large loops.
- In eukaryotes the DNA is packaged by histones, which are positively charged basic proteins rich in lysine and arginine, both basic amino acid residues.
- A histone octamer is made of eight histone molecules. Wrapping of the negatively charged DNA around it forms a nucleosome, which typically holds 200 bp of DNA.
- Nucleosomes are the repeating units of chromatin and appear as 'beads-on-string' under the electron microscope. Chromatin is coiled further into chromatin fibres, which condense at metaphase into chromosomes.
- Packaging beyond the nucleosome level needs another set of proteins, the non-histone chromosomal (NHC) proteins.
- Euchromatin is loosely packed, stains light and is transcriptionally active. Heterochromatin is densely packed, stains dark and is inactive.
Questions
4 answers
- What does the "Packing 2.2 m of DNA into a nucleus" simulation show?
- Zoom from 2.2 m of DNA to a chromosome: DNA around histone octamers (+ve lysine/arginine), 200 bp per nucleosome, linker DNA, fibre, chromosome; eu- vs heterochromatin.
- What mistake does the "Packing 2.2 m of DNA into a nucleus" simulation fix?
- A common mistake it clears up: thinking histones are acidic; confusing euchromatin and heterochromatin.
- Has NEET asked about this idea?
- Yes. NEET has asked about this idea 6 times in 10 years of papers.
- Is this simulation free?
- Yes. It is free and runs in the browser on a phone or a laptop. It belongs to the lesson "Packaging of the DNA helix" in Molecular Basis of Inheritance (Class 12 Biology).
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